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Num	GeneID	Chromosome	Position	Ref.allele	Alt.allele	Mutant type	Impacts	Amino acid change	SampleID
1	BAA04g09290	A04	12809332	G	A	downstream_gene_variant	MODIFIER	c.*591C>T\|	S200
2	BAA04g09290	A04	12809956	G	A	synonymous_variant	LOW	c.420C>T\|p.Cys140Cys	S206
3	BAA04g09290	A04	12810446	C	T	missense_variant	MODERATE	c.29G>A\|p.Gly10Glu	S109
4	BAA04g09290	A04	12810475	C	T	upstream_gene_variant	MODIFIER	c.-1G>A\|	S35
5	BAA04g09290	A04	12810494	C	T	upstream_gene_variant	MODIFIER	c.-20G>A\|	S12
6	BAA04g09290	A04	12810642	C	T	upstream_gene_variant	MODIFIER	c.-168G>A\|	S163
7	BAA04g09290	A04	12811014	C	T	upstream_gene_variant	MODIFIER	c.-540G>A\|	S278
8	BAA04g09290	A04	12811047	T	A	upstream_gene_variant	MODIFIER	c.-573A>T\|	S145 S148 S172 S185 S196 S217 S226 S248 S260 S293 S30 S304 S69 S7 S78 S9 S92
9	BAA04g09290	A04	12811051	G	T	upstream_gene_variant	MODIFIER	c.-577C>A\|	S108 S115 S168 S171 S185 S198 S220 S237 S247 S33 S37 S51 S55 S72 S9 S92 S99
10	BAA04g09290	A04	12811138	C	T	upstream_gene_variant	MODIFIER	c.-664G>A\|	S113 S123 S129 S140 S150 S151 S160 S162 S259 S26 S268 S301 S44 S75
11	BAA04g09290	A04	12811210	C	A	upstream_gene_variant	MODIFIER	c.-736G>T\|	S121 S152 S178 S185 S188 S42 S93
12	BAA04g09290	A04	12811252	C	T	upstream_gene_variant	MODIFIER	c.-778G>A\|	S202
13	BAA04g09290	A04	12811313	C	G	upstream_gene_variant	MODIFIER	c.-839G>C\|	S106 S278
14	BAA04g09290	A04	12811315	T	A	upstream_gene_variant	MODIFIER	c.-841A>T\|	S106 S278
15	BAA04g09290	A04	12811327	G	A	upstream_gene_variant	MODIFIER	c.-853C>T\|	S106 S278
16	BAA04g09290	A04	12811413	C	T	upstream_gene_variant	MODIFIER	c.-939G>A\|	S105
17	BAA04g09290	A04	12811432	A	G	upstream_gene_variant	MODIFIER	c.-958T>C\|	S121 S134 S238 S239 S263 S30 S42 S60 S92
18	BAA04g09290	A04	12811447	A	T	upstream_gene_variant	MODIFIER	c.-973T>A\|	S252 S281
19	BAA04g09290	A04	12811466	G	T	upstream_gene_variant	MODIFIER	c.-992C>A\|	S232
20	BAA04g09290	A04	12811476	A	T	upstream_gene_variant	MODIFIER	c.-1002T>A\|	S100 S109 S11 S116 S188 S221 S223 S23 S234 S27 S55 S67 S96
21	BAA04g09290	A04	12811495	C	T	upstream_gene_variant	MODIFIER	c.-1021G>A\|	S262
22	BAA04g09290	A04	12811497	C	A	upstream_gene_variant	MODIFIER	c.-1023G>T\|	S221
23	BAA04g09290	A04	12811512	G	A	upstream_gene_variant	MODIFIER	c.-1038C>T\|	S183 S304 S68
24	BAA04g09290	A04	12811522	A	T	upstream_gene_variant	MODIFIER	c.-1048T>A\|	S105 S11 S123 S13 S143 S149 S155 S157 S177 S192 S201 S223 S226 S230 S242 S250 S87 S98
25	BAA04g09290	A04	12811536	T	C	upstream_gene_variant	MODIFIER	c.-1062A>G\|	S116 S133 S30 S67 S86

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