| Num | GeneID | Chromosome | Position | Ref.allele | Alt.allele | Mutant type | Impacts | Amino acid change | SampleID |
|---|---|---|---|---|---|---|---|---|---|
| 1 | BAA09g36430 | A09 | 44761461 | C | T | upstream_gene_variant | MODIFIER | c.-3552C>T| |
S271 |
| 2 | BAA09g36430 | A09 | 44763979 | C | T | upstream_gene_variant | MODIFIER | c.-1034C>T| |
S213 |
| 3 | BAA09g36430 | A09 | 44765126 | C | T | synonymous_variant | LOW | c.114C>T|p.Thr38Thr |
S108 S226 S239 S267 |
| 4 | BAA09g36430 | A09 | 44765168 | T | A | synonymous_variant | LOW | c.156T>A|p.Gly52Gly |
S108 S14 S226 S238 S239 S257 S267 |
| 5 | BAA09g36430 | A09 | 44765171 | C | T | synonymous_variant | LOW | c.159C>T|p.Ser53Ser |
S108 S14 S239 S257 S267 |
| 6 | BAA09g36430 | A09 | 44765174 | A | C | missense_variant | MODERATE | c.162A>C|p.Glu54Asp |
S108 S14 S226 S238 S239 S257 S267 |
| 7 | BAA09g36430 | A09 | 44765175 | A | C | synonymous_variant | LOW | c.163A>C|p.Arg55Arg |
S108 S14 S226 S238 S239 S257 S267 |
| 8 | BAA09g36430 | A09 | 44765177 | A | T | missense_variant | MODERATE | c.165A>T|p.Arg55Ser |
S108 S14 S226 S239 S257 S267 |
| 9 | BAA09g36430 | A09 | 44765201 | A | T | synonymous_variant | LOW | c.189A>T|p.Ser63Ser |
S108 S14 S226 S238 S239 S257 S267 |
| 10 | BAA09g36430 | A09 | 44765207 | G | A | synonymous_variant | LOW | c.195G>A|p.Glu65Glu |
S108 S14 S201 S226 S238 S239 S257 S267 |
| 11 | BAA09g36430 | A09 | 44765208 | C | T | missense_variant | MODERATE | c.196C>T|p.Pro66Ser |
S108 S14 S201 S226 S238 S239 S257 S267 |
| 12 | BAA09g36430 | A09 | 44765237 | A | C | synonymous_variant | LOW | c.225A>C|p.Pro75Pro |
S108 S14 S201 S239 S257 S267 |
| 13 | BAA09g36430 | A09 | 44765264 | C | A | synonymous_variant | LOW | c.252C>A|p.Gly84Gly |
S108 S14 S239 S257 S267 |
| 14 | BAA09g36430 | A09 | 44765267 | C | T | synonymous_variant | LOW | c.255C>T|p.Leu85Leu |
S108 S14 S239 S257 S267 |
| 15 | BAA09g36430 | A09 | 44765273 | C | T | synonymous_variant | LOW | c.261C>T|p.Ala87Ala |
S108 S14 S239 S257 S267 |
| 16 | BAA09g36430 | A09 | 44765528 | A | T | synonymous_variant | LOW | c.516A>T|p.Val172Val |
S220 S257 S267 S91 |
| 17 | BAA09g36430 | A09 | 44765531 | G | A | synonymous_variant | LOW | c.519G>A|p.Glu173Glu |
S220 S257 S267 S91 |
| 18 | BAA09g36430 | A09 | 44765534 | T | C | synonymous_variant | LOW | c.522T>C|p.Gly174Gly |
S220 S257 S267 S91 |
| 19 | BAA09g36430 | A09 | 44765552 | G | T | missense_variant | MODERATE | c.540G>T|p.Glu180Asp |
S220 S226 S257 S267 S91 |
| 20 | BAA09g36430 | A09 | 44765555 | A | T | synonymous_variant | LOW | c.543A>T|p.Gly181Gly |
S220 S257 S267 S91 |
| 21 | BAA09g36430 | A09 | 44765570 | A | C | synonymous_variant | LOW | c.558A>C|p.Ala186Ala |
S201 S226 S238 S239 |
| 22 | BAA09g36430 | A09 | 44765588 | A | C | synonymous_variant | LOW | c.576A>C|p.Pro192Pro |
S201 S213 S226 S238 S239 S267 |
| 23 | BAA09g36430 | A09 | 44765613 | C | T | missense_variant | MODERATE | c.601C>T|p.Leu201Phe |
S201 S213 S238 S239 S267 |
| 24 | BAA09g36430 | A09 | 44765621 | C | T | synonymous_variant | LOW | c.609C>T|p.Thr203Thr |
S220 S239 S257 S267 S91 |
| 25 | BAA09g36430 | A09 | 44765627 | A | C | synonymous_variant | LOW | c.615A>C|p.Pro205Pro |
S220 S239 S257 S267 S91 |